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Release Notes

1.0.4_6.0 [2021-09-22]

Maintenance:

  • Dev notes

Enhancements:

  • Add configuration options for DOF, FNIRT, and Search Space

1.0.3_6.0 [2021-09-20]

Maintenance:

  • Add docs + release_notes.md

Enhancements:

  • Upgrade to FSL 6.0
  • Add flexible standard template

Fixes:

  • Highpass filter cutoff variable now consistent
  • Changed REG_STANDARD_IMAGE default to yes

0.1.6 [2019-11-20]

Maintenance:

  • Changed gear category from utility to analysis

0.1.5 [2019-11-19]

Fixes:

  • Fixed FWHM configuration parameter parsing in run script (was incorrectly referencing FW_CONFIG_FWHM instead of FWHM)

Maintenance:

  • Updated Docker image tag from 0.1.4 to 0.1.5
  • Reorganized manifest.json structure with gear-builder configuration
  • Updated FSL version label from v6.0 to v5.0 in gear label
  • Updated credit attribution in run script from @UPENN to @CUMC

0.1.4 [2018-08-16]

Enhancements:

  • Added low-pass filtering configuration option (LPF) with default disabled

Fixes:

  • Corrected input file description from "Anatomical NIfTI image, or multi-channel set of images, to be segmented" to "FUNCTIONAL NIfTI file to be processed"

Documentation:

  • Added low-pass filtering step to README feature list

0.1.3 [2018-06-26]

Enhancements:

  • Added suite metadata to identify gear as part of the FSL suite

0.1.2 [2018-06-26]

Enhancements:

  • Added Docker container for running FSL's FEAT (FMRI Expert Analysis Tool) with preprocessing capabilities
  • Added support for motion correction using MCFLIRT
  • Added slice-timing correction with multiple acquisition order options (regular up/down, interleaved, custom order/timing files)
  • Added spatial smoothing with configurable FWHM
  • Added intensity normalization and highpass temporal filtering options
  • Added brain extraction using BET
  • Added optional registration to MNI152 standard space
  • Added configurable preprocessing parameters including brain background threshold, Z threshold, noise level, and temporal smoothness
  • Added automatic HTML report generation using webpage2html
  • Added compressed output archives for logs, motion correction, and registration results

Documentation:

  • Added README with gear description and preprocessing steps overview
  • Added Docker Hub badges for pulls and stars